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414
questions
Tagged
508
views
3
answers
no
votes
2017-08-29 23:09:39 -0500
JW Carlson
Changing the database in lisp expression
pythoncyc
lisp
api
hierarchy
2k
views
3
answers
no
votes
2020-01-09 14:01:20 -0500
waikit
how I can edit the different comparments of my PGDB
Compartments
in
fba
file
379
views
2
answers
no
votes
2017-10-24 23:22:16 -0500
rcaspi
Where is the Tools: Propagate Metacyc Data Updates
Mac
pgdb
propagate
metacyc
6k
views
2
answers
no
votes
2016-02-12 04:53:24 -0500
rpelicae
How to propagate MetaCyc data updates in Patway Tools 19.5
Mac
pgdb
propagate
metacyc
1k
views
2
answers
no
votes
2016-09-02 14:53:04 -0500
latendresse
Trying to create PGDB and getting "Object is not coercible to a frame for KB UNBASE"
contigs
pgdb
coercible
ocelot
305
views
2
answers
no
votes
2016-08-12 12:32:38 -0500
ptools-admin
Pathway Tools install seems to hang
Mac
installation
installer
404
views
2
answers
no
votes
2016-09-09 11:47:26 -0500
Suzanne Paley
How to save pathway images with omics data overlaid?
api
omics
desktop
735
views
2
answers
no
votes
2017-02-27 15:26:57 -0500
ptools-admin
How to publish my PGDB
pgdb
web
362
views
2
answers
no
votes
2017-02-27 16:04:34 -0500
Suzanne Paley
Anyone got an error "Duplicate genetic element ID NIL"
parse
error
386
views
2
answers
no
votes
2017-05-18 08:40:07 -0500
jo
access pathologic via api
pathologic
pgdb
api
21k
views
2
answers
no
votes
2017-08-15 05:34:05 -0500
jo
Accessing the pathway hierarchy
hierarchy
pathway
api
499
views
2
answers
no
votes
2017-12-14 22:31:59 -0500
JW Carlson
Pathologic: Is there a way not to show progress windows
pathologic
progress
1k
views
2
answers
no
votes
2018-06-04 18:54:15 -0500
JW Carlson
Exporting to a BioPAX File
BioPAX
4k
views
2
answers
no
votes
2019-10-03 03:45:30 -0500
bcamara
Make reaction assignments to polypeptides classified in the "No match" category
reaction
assignments
1k
views
2
answers
no
votes
2020-03-05 14:25:48 -0500
Suzanne Paley
Topology of pathway differences between pathway-tools and .owl file
paxtools
OWL
metacyc
513
views
2
answers
no
votes
2020-04-23 14:00:06 -0500
dnnunn
Issue with Windows version crash
PtoolsError
203
views
2
answers
no
votes
2020-07-08 02:58:04 -0500
mdubois
Missing Pathways in PTools compared to Microcyc
Missing
pathways
182
views
2
answers
no
votes
2020-06-01 02:44:31 -0500
bcamara
Unbalanced reactions not producing biomass metabolites
biomass
metabolites
unbalanced
reactions
828
views
2
answers
no
votes
2020-06-30 23:58:38 -0500
bcamara
How to include new instances to a compound class
lipids
compound
instances
561
views
2
answers
no
votes
2022-03-14 11:40:12 -0500
pbourceau
Error: KB is NIL in GET-SLOT-VALUE
pathologic
10k
views
1
answer
no
votes
2013-05-01 13:46:31 -0500
quang777
Making a copy of a PGDB on the same computer (i.e. change the OrgID)
ptools
faq
pgdb
7k
views
1
answer
no
votes
2014-03-21 11:51:04 -0500
ptools-admin
Configuring Proxy Server Access to Circumvent a Firewall for Patch Downloading
patches
firewall
1k
views
1
answer
no
votes
2013-05-01 13:50:36 -0500
quang777
User-generated ortholog data & Pathway Tools
ortholog
11k
views
1
answer
no
votes
2015-08-14 17:00:23 -0500
ptools-admin
MySQL PGDBs: Creating & querying them
pgdb
mysql
sql
5k
views
1
answer
no
votes
2013-05-01 14:02:14 -0500
quang777
Graphics do not get generated
webserver
images
1k
views
1
answer
no
votes
2013-05-01 14:03:24 -0500
quang777
Importing a Flat-File PGDB into Pathway Tools
pgdb
biocyc
import
1k
views
1
answer
no
votes
2015-06-19 19:18:39 -0500
quang777
Setting up Emacs to interact with Pathway Tools in Lisp Mode
api
ptools
emacs
lisp
1k
views
1
answer
no
votes
2017-08-18 13:06:28 -0500
ptools-admin
Configuration for multiple curators
curation
mysql
pgdb
1k
views
1
answer
no
votes
2013-05-01 14:05:42 -0500
quang777
Unable to edit PGDBs
pgdb
2k
views
1
answer
no
votes
2013-05-01 14:22:25 -0500
quang777
Retaining Locally Created PGDBs Across New Pathway Tools Versions
pgdb
installation
1
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3
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5
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