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106
questions
Tagged
456
views
1
answer
no
votes
2019-11-27 12:53:29 -0600
Suzanne Paley
No reactions for this EC number are present in MetaCyc database
no
reaction
ec
number
594
views
1
answer
no
votes
2019-11-18 13:22:18 -0600
Suzanne Paley
Reactions not found in MetaCyc
reactions
not
metacyc
310
views
1
answer
no
votes
2019-11-15 02:08:48 -0600
Suzanne Paley
Using Pathway tools for unannotated genome
metagenomes
56
views
1
answer
no
votes
2019-10-24 16:28:49 -0600
Suzanne Paley
remove pathways from a PGDB
removing
pathways
from
pgdb
39
views
2
answers
no
votes
2019-10-03 03:45:30 -0600
bcamara
Make reaction assignments to polypeptides classified in the "No match" category
reaction
assignments
49
views
1
answer
no
votes
2019-05-28 17:08:22 -0600
gpharhay
ptlisp - Error: Package "SELECT-ORGANISM" not found.
ptlisp
select-organism
71
views
1
answer
no
votes
2019-05-09 12:14:25 -0600
Suzanne Paley
Pathologic GenBank File Import Weirdness- Ptools v.23
pathologic
PGDB-Accessions
overview
56
views
1
answer
no
votes
2019-04-10 16:30:34 -0600
Peter Karp
Programmatically delete Frames
pathway-tools
130
views
1
answer
no
votes
2019-03-28 11:49:59 -0600
pmidford
Pythoncyc PToolsError
pythoncyc
PtoolsError
error
1k
views
1
answer
no
votes
2019-03-13 16:53:46 -0600
pmidford
How to use PythonCyc on Windows 10
pythoncyc
windows
63
views
1
answer
no
votes
2018-12-16 19:57:04 -0600
Suzanne Paley
Publish PGDB on GitHub?
pgdb+publish+ptools
123
views
1
answer
no
votes
2018-11-08 17:32:38 -0600
Suzanne Paley
Running the www server with SSL?
www
ssl
902
views
1
answer
no
votes
2018-10-30 13:04:13 -0600
jo
error in 22.5: aclssl.so undefined symbol
ptools
install
library
133
views
1
answer
no
votes
2018-10-26 00:57:34 -0600
Suzanne Paley
How to export regulation table from MetaCyc
regulation
export
2k
views
1
answer
no
votes
2018-09-24 11:56:13 -0600
Suzanne Paley
checkpoint file error
pgdb
checkpoint
4k
views
1
answer
no
votes
2018-08-24 22:26:34 -0600
Suzanne Paley
Ubuntu 18.04 LTS "Bionic Beaver" incompatible with ptools v.22
ubuntu
18.04LTS
150
views
1
answer
no
votes
2018-08-13 16:40:35 -0600
Suzanne Paley
How can we rebuild the PGDBs with our data?
Cellularoverview
267
views
1
answer
no
votes
2018-06-27 19:09:23 -0600
Richard
Cellular Overview Glitch in web version of tools
Cellular
overview
CellularOverview+web
166
views
1
answer
no
votes
2018-06-12 23:37:58 -0600
Suzanne Paley
return value of pathway-components
api
pathway-tools
lisp
194
views
2
answers
no
votes
2018-06-04 18:54:15 -0600
JW Carlson
Exporting to a BioPAX File
BioPAX
383
views
1
answer
no
votes
2018-05-23 00:40:14 -0600
Suzanne Paley
Modify all instances of interactions between a particular transcription factor and all target promoters?
regulatory
interaction
transcription
TF
3k
views
1
answer
no
votes
2018-05-09 17:08:36 -0600
gpharhay
Display read depth
read
coverage
RNA-Seq
146
views
1
answer
no
votes
2018-04-25 17:41:20 -0600
Suzanne Paley
Pathologic tool ceased at creating gene frames
pathologic
automated_build
creating_gene
frames
614
views
1
answer
no
votes
2018-04-19 13:05:25 -0600
Suzanne Paley
It would be useful to create smart tables from a list of EC numbers
smarttables
ec
reactions
3k
views
1
answer
no
votes
2018-02-06 19:15:32 -0600
Suzanne Paley
metabolite list highlight
highlight
compound
133
views
2
answers
no
votes
2017-12-14 22:31:59 -0600
JW Carlson
Pathologic: Is there a way not to show progress windows
pathologic
progress
173
views
no
answers
no
votes
2017-12-06 01:01:08 -0600
Anonymous
Fatal error: cannot open the display: NIL
NIL
175
views
1
answer
no
votes
2017-11-28 02:44:20 -0600
Suzanne Paley
Information from the DIAGRAM-INFO slot
pathway-tools
Grasper-CL
DIAGRAM-INFO
737
views
no
answers
no
votes
2017-11-24 05:39:47 -0600
johnepearl
Reaction locations in/out to cytosol/extracellular space
reaction
location
446
views
no
answers
no
votes
2017-11-14 17:01:02 -0600
gpharhay
Interpreting Metabolic Route Search
Metabolic
route
search
1
2
3
4
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