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Identifying superpathways from pathways automatically

I have a large matrix of abundance of hundreds of meta-cyc pathways in hundreds of samples. I would like to group these pathways into their superpathways. I can do this by looking up each pathway on the meta-cyc webiste but would like to do this in an automated way. I have downloaded pathway tools - can this be used to achieve this? Please can you point me how to do this?

Thank you,


version pathway tools 19.0 platform Mac 10.11.4