Ask Pathway Tools logo   Pathway Tools Question & Answer forum for SRI's Pathway Tools

Ask Your Question

Revision history [back]

click to hide/show revision 1
initial version

How to propagate MetaCyc data updates in Patway Tools 19.5

Dear,

I include the link (ask.pathwaytools.com/question/17857/where-is-the-tools-propagate-metacyc-data-updates/?answer=17860#post-id-17860) to the previous question/answer which was made with an anonymous account.

I have downloaded a BioCyc Tier 3 PGDB in Pathway Tools from the PGDB Registry. This PGDB was originally made with Pathologic using Pathway Tools 18.5 and MetaCyc 18.5.

I would like to use this PGDB for metabolic modeling purposes using MetaFlux, however to allow proper manual curation and according to this blog (pathwaytools.blogspot.be/2014/12/propagating-updates-from-metacyc-why.html) I'd need to propagate updates in MetaCyc to my PGDB. I have already upgraded the PGDB schema to the new Pathway Tools 19.5, however according to the manual this does not include the propagation of MetaCyc updates.

I have already done some manual curation (e.g. pruning false-positive pathways, ...) which I would like to keep, but no major Reaction or Pathway edits (although I may want to do this in the future).

How could I make the 'Propagate MetaCyc Data Updates' available in my version of Pathway Tools?