Pathway Tools Question & Answer forum for SRI's Pathway Tools

Why does blast not work w/ Pathway Tools?

asked 2013-07-03 12:21:04 -0600

Anonymous

When I run Pathway Tools, either via the Hole Filler or in web mode, it is unable to find blast even though I have it installed.

edit retag flag offensive close merge delete

add a comment

1 Answer

Sort by » oldest newest most voted

answered 2014-10-09 12:25:01 -0600

ptools-admin
468 ●10 ●14 ●15

updated 2014-10-10 12:12:46 -0600

Pathway Tools uses the system's PATH environmental variable to find where external programs are installed. By default, when BLAST is installed, it may only add the path to blast binaries to the user's default path, not the system's default path. Please review the Pathway Tools BLAST installation guide for details: http://bioinformatics.ai.sri.com/ptools/installation-guide/released/blast.html

Once BLAST is added to the default search path, you'll need to restart Pathway Tools for it to find the blast executables.

edit flag offensive delete link

add a comment

Your Answer

Please start posting anonymously - your entry will be published after you log in or create a new account.

Add Answer

Question Tools

Stats

Asked: 2013-07-03 12:21:04 -0600

Seen: 7,076 times

Last updated: Oct 10 '14