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I try to create PGDB and get error TAX-2157" is not coercible to a frame for KB AIPTASIACYCBASE [condition type: NOT-COERCIBLE-TO-FRAME]

asked 2022-08-31 17:36:30 -0500

anonymous user

Anonymous

updated 2022-08-31 17:38:49 -0500

Pathway Tools Version: 26.0 Platform: Ubuntu 22.04.1 LTS Error Message: Object "TAX-2157" is not coercible to a frame for KB AIPTASIACYCBASE [condition type: NOT-COERCIBLE-TO-FRAME]

I have a functional genomic annotation in gbff and gff format and I need to create a PGBD using PathoLogic, but when trying to build the database I get an error in the console saying Error: Object "TAX-2157" is not coercible to a frame for KB AIPTASIACYCBASE [condition type: NOT-COERCIBLE-TO-FRAME] What could be wrong? Thank you very much for the answers http:// (image description) http:// (image description)

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answered 2022-09-01 17:07:26 -0500

Suzanne Paley gravatar image

Hi, I'm not sure exactly what the problem could be, but it sounds like a bug. At what stage in the PGDB creation process did the error occur? Try generating a stack backtrace by typing :zoom :count :all at the error prompt in the console, and send a description of the problem plus the stack backtrace to ptools-support@ai.sri.com. I'm not sure whether you tried the build using the gbff file or the gff file as input, but whichever it was, you might want to send that too so we can see if we can reproduce the problem.

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Asked: 2022-08-31 17:36:30 -0500

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Last updated: Sep 01