MetaCyc hierarchy to invetigate/identify specific pathways

asked 2021-03-23 15:37:55 -0500

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Dear forum,

Thanks for the awesome tools you are developing.

I am working on oral microbiome dataset and I would like to:

decorate some pathway focus specifically on some Pathways belonging e.g., Carbohydrate Degradation (134 instances).

I have been using the latest humann3 - alpha (MetaCyc v19.1).

Do you have the hierarchy file available for the pathways? for the genes (uniref90, GO, EC, …)

Thanks

Flo

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