how I can edit the different comparments of my PGDB
Hello everybody! I am working with MetaFlux and my PGDB at Development Mode. I am trying to figure out which try-nutrient, try-biomass and try-secretion sets are more appropriate for my PGDB, and for each of them I have to indicate the comparment in which they are located. I have realized that my PGDB has the following compartments:
CCO45IN (CCO-IN) CCO45MIDDLE (CCO-MIDDLE) CCO45OUT (CCO-OUT) CCO45OUT45CCO45IN (CCO-OUT-CCO-IN) CCO45PM45BAC45NEG(CCO-PM-BAC-NEG) T (T) c (CCO-CYTOSOL)
Except the last one (c), I do not understant to what compartment they are referring to. Is there a way to remove or edit them? Is it possible to obtain a list of reactions located in each compartment of my PGDB? How many different compartment are there in MetaCyc? and how I can obtain the list of them?
Thank you so much
Best regards
Beatriz