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ptlisp - Error: Package "SELECT-ORGANISM" not found.

asked 2019-05-28 10:35:18 -0500

gpharhay gravatar image


Using ptlisp, I am trying to select a database to load ab inito computed promoter and transcription factor binding sites into a PGDB. Previously, I accomplished this using the select-organism package. It seems that this package no longer exists given the response of the system to my issuance of the select organism command below.

[changing package from "COMMON-LISP-USER" to "ECOCYC"] EC(1): (select-organism:org-id 'SALMON_1918')

Error: Package "SELECT-ORGANISM" not found. [condition type: READER-ERROR]

How can select a PGDB to operate on to load promoter and and transcription factor binding site info? Thanks.

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answered 2019-05-28 17:08:22 -0500

gpharhay gravatar image

command malformed and should be

(select-organism :org-id 'SALMON_1918)

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Asked: 2019-05-28 10:35:18 -0500

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Last updated: May 28 '19