Programmatically delete Frames
Dear,
Pathway Tools typically overpredicts the number of pathway, reaction and metabolite frames that should be linked to a specific microorganism.
As part of the curation process, I have detached genes from reactions, ommitted pathays, etc.. But now I find myself with a lot of empty frames. For example, by deleting a pathway the underlying pathway class is not deleted. This has still to be done manually afterwards, which is time-consuming.
Is there a way to programmatically delete these (empty) frames, e.g. using PythonCyc?
Kind regards, Rudy