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return value of pathway-components

asked 2018-06-12 13:48:46 -0600

JW Carlson gravatar image

Thanks for all your help on pathway-tools.

I ran into a discrepancy in the documentation for the call to pathway-components. I'm seeing 4 values returned: a list of reactions, then 3 integers. The documentation says that the return value is a list and 2 integers. The first and last integers look like the number of connected components and the total number of reactions (as described in the docs). But what is the second integer?

For example, for PWY-6341 in MetaCyc, the integers are 2,4,8.

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answered 2018-06-12 23:37:58 -0600

Suzanne Paley gravatar image

Looking at the code, the 2nd integer is the number of reactions in the first component. Why just the first? Why was this change made? I don't know! The change doesn't seem to have been documented in any way, and I can't find anything that calls this function internally that would require that value (which would be trivial to compute from the first return value). So now you know as much as I do!

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Asked: 2018-06-12 13:48:46 -0600

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Last updated: Jun 12 '18