 | Pathway Tools Question & Answer forum for SRI's Pathway Tools |
Hi,
I am working with outputs from Apollo (a GMOD tool, JBrowse plugin for manual annotations).
Does anybody work with both Apollo and Pathway tools ? How do you handle the conversion from GFF3 (Apollo output) to GenBank (input format for Pathway Tools) ?
Thanks for your help.
Loraine Guéguen
Pathway Tools currently doesn't support the GFF3 format. We do intend to add that at some point in the future, but we don't have a schedule of when that feature will be available.
Doing a quick search on those two formats, there appears to be quite a number of conversion tools from genbank to gff3. However, I'm not sure if those tools will convert in the other direction.
Asked: 2017-03-22 09:09:19 -0500
Seen: 3,354 times
Last updated: Mar 31 '17
Copyright Pathway Tools 2015 Content on this site is licensed under a Creative Commons Attribution Share Alike 3.0 license.
