Pathway Tools Question & Answer forum for SRI's Pathway Tools

How to convert gff3 files to Genbank files for input into Pathway Tools?

gff3
apollo

asked 2017-03-22 09:09:19 -0600

Anonymous

Hi,

I am working with outputs from Apollo (a GMOD tool, JBrowse plugin for manual annotations).

Does anybody work with both Apollo and Pathway tools ? How do you handle the conversion from GFF3 (Apollo output) to GenBank (input format for Pathway Tools) ?

Thanks for your help.

Loraine Guéguen

edit retag flag offensive close merge delete

add a comment

1 Answer

Sort by » oldest newest most voted

answered 2017-03-31 16:45:20 -0600

ptools-admin
468 ●10 ●14 ●15

Pathway Tools currently doesn't support the GFF3 format. We do intend to add that at some point in the future, but we don't have a schedule of when that feature will be available.

Doing a quick search on those two formats, there appears to be quite a number of conversion tools from genbank to gff3. However, I'm not sure if those tools will convert in the other direction.

edit flag offensive delete link

add a comment

Your Answer

Please start posting anonymously - your entry will be published after you log in or create a new account.

Add Answer

Question Tools

1 follower

Stats

Asked: 2017-03-22 09:09:19 -0600

Seen: 730 times

Last updated: Mar 31 '17

Copyright Pathway Tools 2015 Content on this site is licensed under a Creative Commons Attribution Share Alike 3.0 license.

here is how