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How to convert gff3 files to Genbank files for input into Pathway Tools?

asked 2017-03-22 09:09:19 -0500

anonymous user

Anonymous

Hi,

I am working with outputs from Apollo (a GMOD tool, JBrowse plugin for manual annotations).

Does anybody work with both Apollo and Pathway tools ? How do you handle the conversion from GFF3 (Apollo output) to GenBank (input format for Pathway Tools) ?

Thanks for your help.

Loraine Guéguen

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answered 2017-03-31 16:45:20 -0500

ptools-admin gravatar image

Pathway Tools currently doesn't support the GFF3 format. We do intend to add that at some point in the future, but we don't have a schedule of when that feature will be available.

Doing a quick search on those two formats, there appears to be quite a number of conversion tools from genbank to gff3. However, I'm not sure if those tools will convert in the other direction.

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Asked: 2017-03-22 09:09:19 -0500

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Last updated: Mar 31