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Identifying superpathways from pathways automatically

asked 2016-11-02 12:26:14 -0500

anonymous user


I have a large matrix of abundance of hundreds of meta-cyc pathways in hundreds of samples. I would like to group these pathways into their superpathways. I can do this by looking up each pathway on the meta-cyc webiste but would like to do this in an automated way. I have downloaded pathway tools - can this be used to achieve this? Please can you point me how to do this?

Thank you,


version pathway tools 19.0 platform Mac 10.11.4

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answered 2016-11-03 13:17:00 -0500

Richard gravatar image

Using our website, you can create a SmartTable of all your pathways. You can then use "Add Property Column" and select "Super-Pathways". This will give you the Super Pathway for each of your pathways.

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Asked: 2016-11-02 12:26:14 -0500

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Last updated: Nov 03 '16