Pathway Tools Question & Answer forum for SRI's Pathway Tools

How do I import a draft genome?

genome
pgdb

asked 2016-08-04 11:27:26 -0500

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I have an unpublished Bacterial draft genome that I would like to analyze and compare to known pathways from several Bacterial species (with downloaded PGDB files). I also have a couple of genomes that can be found on NCBI but don't have PGDB files associated that I would like to analyze and compare. How can I import this data?

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answered 2016-09-01 13:14:53 -0500

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As long as these draft genomes are available in genbank format, you an use them to build a PGDB using Pathologic. Please refer to Chapter 7 on how to run Pathologic using genbank formatted files.

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Asked: 2016-08-04 11:27:26 -0500

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Last updated: Sep 01 '16

Pathway Tools Question & Answer forum for SRI's Pathway Tools

How do I import a draft genome? edit

1 Answer