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Omics data on pathway collage: Bad request

asked 2016-05-30 06:40:27 -0500

anonymous user


I want to explore the pathway collage feature with some omics data, but painting always fails. Taking for instance the L-tyrosine degradation I pathway and the below lines of data, specifying "Reaction identifiers and/or EC numbers" as keys plus column 1 as data containing, I get a nicely painted, informative pathway. If I create a pathway collage from this single pathway, however, and try to paint it analogously using the same data I get a "Error: Bad request".

Example omics data: 0 2.13823627998807 1.90668133573749 0 1.90978388873943


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The data should be on five lines, two fields on each.

Daniel gravatar imageDaniel ( 2016-06-02 00:44:05 -0500 )edit

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answered 2016-07-05 12:46:24 -0500

Suzanne Paley gravatar image

updated 2016-07-05 14:32:33 -0500

Hi, I'm sorry for the delay in responding. I've reproduced the problem and will see if I can generate a fix. However I thought I'd get back to you now with a workaround. If you are able to load your data onto a pathway page, the software will remember your latest dataset (including any data for reactions that are not in the pathway you are currently viewing) in the current browsing session and automatically transfer it to any collage you subsequently create. So while at this time I cannot create a collage containing this pathway and load your data into it, if I load your data onto the biocyc pathway page, and then generate a collage containing this (and any other) pathway, I can check the View->Show Omics Data box to see the data on the collage.

I hope this helps for now. I will follow up again when a fix for the original problem is available.


UPDATE: Problem has been fixed.

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Thanks! /Daniel.

Daniel gravatar imageDaniel ( 2016-07-11 09:06:32 -0500 )edit

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Asked: 2016-05-30 06:40:27 -0500

Seen: 282 times

Last updated: Jul 05 '16