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Is it possible to run Pathway Tools w/o X-Windows?

asked 2015-06-17 19:25:18 -0500

anonymous user


updated 2015-06-30 13:16:21 -0500

ptools-admin gravatar image

I'm trying to script processing Pathologic in batch mode. Does it still require X in batch mode?

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answered 2015-06-19 12:01:41 -0500

ptools-admin gravatar image

Pathway Tools desktop mode requires X in order to work. However, if you use Pathway Tools in batch mode, you can disable the X dependencies by disabling processing of overviews w/ the following command line arguments: -no-cel-overview (see Section 2.3) -no-web-cel-overview (see Section 2.3)

For more details on using Pathway Tools in batch processing mode, see this other question.

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Asked: 2015-06-17 19:25:18 -0500

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Last updated: Jun 30 '15