How do I run multiple instances of Pathway Tools?

edit

If you plan to run multiple Pathway Tools in batch mode (typically using batch Pathologic, via -patho argument, Section 7.6 of User Guide), you need to use these additional flags:

• -no-cel-overview (see Section 2.3 of UserGuide)
• -no-web-cel-overview (see Section 2.3)
• -disable-metadata-saving (for Pathway Tools version 18.5+)
• -nologfile (turns off an extra debugging log)