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How do I run multiple instances of Pathway Tools?

asked 2015-06-17 16:54:50 -0500

anonymous user


I want to automate the process of generating PGDBs. Is it possible to run multiple instances of Pathway Tools in batch m ...
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answered 2015-06-19 12:03:19 -0500

ptools-admin gravatar image

updated 2015-08-14 17:12:55 -0500

If you plan to run multiple Pathway Tools in batch mode (typically using batch Pathologic, via -patho argument, Section 7.6 of User Guide), you need to use these additional flags:

  • -no-cel-overview (see Section 2.3 of UserGuide)
  • -no-web-cel-overview (see Section 2.3)
  • -disable-metadata-saving (for Pathway Tools version 18.5+)
  • -nologfile (turns off an extra debugging log)
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Asked: 2015-06-17 16:54:50 -0500

Seen: 961 times

Last updated: Aug 14 '15