Ask Pathway Tools logo   Pathway Tools Question & Answer forum for SRI's Pathway Tools

Ask Your Question

Revision history [back]

click to hide/show revision 1
initial version

I believe the answer is no. Section 5.2 of the User Guide gives you step-by-step instructions for how to create a PGDB using an SBML file as the data source. Once you do the Merge Reactions step, you will have a PGDB that contains compounds and reactions, but no pathways. Without any pathways, you will not be able to generate a useful cellular overview diagram. I was going to suggest you just run the PathoLogic Rescore Pathways command on your PGDB, but I believe that since your PGDB won't have any enzymes associated with any reactions, no pathways will be predicted, so that won't help. I'll put in a query to the dev team to see if there is any way around that.