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If you plan to run multiple Pathway Tools in batch mode (typically using batch Pathologic), you need to use these additional flags: -no-cel-overview (see Section 2.3 of UserGuide) -no-web-cel-overview (see Section 2.3) -disable-metadata-saving (for Pathway Tools version 18.5+) -nologfile (turns off an extra debugging log)

If you plan to run multiple Pathway Tools in batch mode (typically using batch Pathologic), you need to use these additional flags: flags:

  • -no-cel-overview (see Section 2.3 of UserGuide) UserGuide)
  • -no-web-cel-overview (see Section 2.3) 2.3)
  • -disable-metadata-saving (for Pathway Tools version 18.5+) 18.5+)
  • -nologfile (turns off an extra debugging log)

If you plan to run multiple Pathway Tools in batch mode (typically using batch Pathologic), Pathologic, via -patho argument, Section 7.6 of User Guide), you need to use these additional flags:

  • -no-cel-overview (see Section 2.3 of UserGuide)
  • -no-web-cel-overview (see Section 2.3)
  • -disable-metadata-saving (for Pathway Tools version 18.5+)
  • -nologfile (turns off an extra debugging log)